# Singularity & slurm


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Check version before downloading singularity deb

lsb_release -a \# check ubuntu version

wget
https://github.com/sylabs/singularity/releases/download/v4.2.1/singularity-ce_4.2.1-focal_amd64.deb

sudo dpkg –install singularity-ce_4.2.1-focal_amd64.deb sudo apt-get
install -f

CUDA_VISIBLE_DEVICES=3 singularity exec –nv alphafold3.sif  
python -u alphafold3/run_alphafold.py  
–input_dir=af_input_ECD_Immunoglobulin/folder_3  
–output_dir=af_output_ECD_Immunoglobulin  
–model_dir=af_models  
–jax_compilation_cache_dir=af_cache/cache  
–norun_data_pipeline | tee run.log

CUDA_VISIBLE_DEVICES=3 singularity exec –nv alphafold3.sif  
python -u alphafold3/run_alphafold.py  
–json_path=af_input_ECD_Immunoglobulin/folder_3/IL6ST_NCR1.json  
–output_dir=af_output_ECD_Immunoglobulin  
–model_dir=af_models  
–jax_compilation_cache_dir=af_cache/cache  
–norun_data_pipeline | tee run.log