Plot

Setup

from katlas.core import *
from katlas.plot import *

import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
import seaborn as sns
import math

# %config InlineBackend.figure_format = 'svg'
# sns.set(rc={"figure.dpi":300, 'savefig.dpi':300})
# sns.set_context('notebook')
# sns.set_style("ticks")

Data

ks = Data.get_ks_dataset()

ks_k = ks[ks.kinase_uniprot=='P00519']

pssm = get_prob(ks_k,'site_seq')

Plot

plot_heatmap(pssm,include_zero=False);

plot_logo(pssm,'kinase')

plot_logo_heatmap(pssm,'kinase')