python-katlas
  1. 2025 NC Paper
  2. Untitled
  • Get Started
  • Modules
    • Data
    • Preprocess
    • PSSM
    • Hierarchical clustering
    • 03_score.ipynb
    • Feature
    • Plot
    • Pathway analysis
    • Alignment
    • Analyze
    • Train ML
    • 11_DL.ipynb
  • 2025 NC Paper
    • Preprocess kinase-substrate datasets
    • Exploratory data analysis
    • Site promiscuity
    • Modi group
    • PSPA scaled data
    • Background frequencies
    • Reactome pathway analysis
    • Kinase embeddings
    • Kmeans motifs
    • Plot heatmap and logo of CDDM
    • Reactome pathway analysis
    • Prepare training set
    • Mutual information
    • Entropy
    • Color
    • Get kinase-specific PSSMs
    • Get kinase-specific PSSMs
    • Get kinase-specific PSSMs
    • Get kinase-specific PSSMs
    • Scoring evaluation
    • Scoring evaluation
    • Scoring evaluation
    • Scoring evaluation
    • Specificity
    • STY composition
    • Untitled
    • Untitled1
  1. 2025 NC Paper
  2. Untitled
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