KATLAS raw

Reproduce datasets and figures for paper [Computational Decoding of Human Kinome Substrate Specificities and Functions]

The function modules for python-katlas is available at: https://github.com/sky1ove/katlas

Install

To run notebooks successfully, install dev version of python-katlas:

pip install 'python-katlas[dev]' -U

System Requirements

We recommend using a CUDA-enabled environment for efficient protein embedding extraction and deep learning model training.

Run import torch; torch.cuda.is_available() to check cuda availability.

Instruction

After installation, git clone this repository through:

git clone https://github.com/sky1ove/katlas_raw.git

Then to go to nbs folder and run notebooks:

cd nbs

Doc site for this repository

Notebooks in the nbs folder can be visualized at:

https://sky1ove.github.io/katlas_raw/